Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904370.1_cds_XP_016454522.1_48540
CDS Infomation

[gene=LOC107778736] [db_xref=GeneID:107778736] [protein=E3 ubiquitin-protein ligase RNF14-like] [protein_id=XP_016454522.1] [location=complement(join(148768..148896,150027..150174,150285..150511,151674..152059,152707..153223,153301..153375,154447..154911))] [gbkey=CDS]
Sequence

ATGTCAAGTTCAAAGGGAAGTCGCAAAGGATCAAAACCAACTCATAATTCTCGTCGCCAA
TTCAATAATCAAAATTGGGTAATCAAATCTCCTCTCAATCAAAATCCAATTGATCCAATA
GAAGTTTCAAAACAAGAATCCATTTCAGAGTTTATTCCAAAAGACCAAAAAAAGCCTCAG
AATCACAAAAATTCCAAAAGGGTATCCAAGAATGGGCGTGCTCATGTGGTTAATGGAAAC
TTCGAGAAGAAAGAGGATGAAGTAGATATTGTAAAACAAGAAAGTGCTAAAGAGGAAGAA
AAGAGTGGTGAAAGTGTAGAGAAAGTGAAAGTTGAGGGGCCTGTTTTGTATAATAATGAT
GTTGATTGTATTTGGAGACGGCTAGAGGAGCTGCAATTGGGTGCTGAGGAGCCCGAGTTA
TCGGCTGAGCAGCTTAGAATCAATGATCAAGCTCAGGAAGATGAGTTACTAGTGCTGGAA
TCAATTTATGGTGACAATGTATTCATTCTTGATAGACAAAATGGCCTACGATCTTTTCAG
ATTCATATACATATTGAAGTTCCTGATGGGCTGACGGTGTTTGTAAATTTAAGTTCCTCT
GGTGCTCTAGGAATATCAGAGGATAGTTCACCTGAGTGCTCATACTCCTTCAAAGTTGAG
CATTTACCACCAATTGTGTTAACATGTTTATTACCTAAATCATATCCGAGCCATCTTGCT
CCTCACTTTACAATCTCTGTCCAGTGGTTGGATTCGGCAAAAATTTCCTCTCTTTGCTCC
ATGCTTGATTCAATCTGGAAGGAACAATTAGGTCAAGAGGTTATATACCAGTGGGTGGAA
TGGTTGCATAGCTCTTCTCTTTCTCATTTTCAGTTTGATCAAGAAATAAAGTTAGGTTTT
TGTGCCAAGAGTCATATTGGAGATCGCCGAGCAATTTCAGGAACTGTCTCACCAGAGGTT
GATATCCCCTCACTCAAGAACTATGACGAGGAACAACGCCATGAGAATTTCCGTAGAAAC
ATTCATCAGTGTTGCATATGTTTCAGCGAATTTCCTGGTATGGAGTTTGTGAGGCTGCCA
TGTCAACACTTTTTCTGCTTGAGTTGCATGAAAACTTACTCCGATATACATGTCAAGGAA
GGTACAATCAGTAAGCTTCTGTGTCCTGAGGCAAAATGTGGAGGTATGATTCCTCCGGGT
TTGCTAAAGCGGTTACTCGGTGAAGTGGAGTTTGAACGTTGGGAATCATTGATGTTACAG
AAAACGTTGGAATCAATGTCTGATGTATGCTACTGCCCAAGATGCGAAACAGTATGCATC
GAGGATGAAGATGTGCATGCCCAATGTGCAAAATGCTTCTATAGTTTTTGTACATTATGC
AAAGAGAAGCGTCATGTCGGAGTTACGTGCATGACACCAGAAATAAAGCTTCGTATTTTG
CAGGAGCGACAGAATTCATCTCAACTGAAAGATGACCAAAGGCACCGTGAGAAAGAAATA
ATCAATGAGATTCTCAGTATGAAGGAAATTCACCGTTCCGCGAAGCAGTGCCCTTCCTGT
AAGATGGCTATCTCGCGAACCGAGGGCTGCAATAAGATGGTGTGCGATAACTGTGGAGCA
TATTTCTGCTATCGTTGTAATCAGGAAATTGAAGGATATGAGCACTTCAGGGAGGGGAAA
TGTGAACTTTTTCCACCAGAAGCAATTCAGATGTGGGAAGAGAGGATTAATCATCGCCAA
ATGGTTGGTCAGATTCAAGCTCAAATCCATGCTAATCATGGTCATCCATGCCCTAATTGT
GGCCAAATGAATGCAAAGGTTGGCAATAACAATCACATATTCTGCTGGGCGTGCCAAAAT
CATTATTGTTACCTTTGTAGAAAGAATGTAAAACGAAGCTCCCAGCATTATGGACCTAAG
GGCTGCAAACAACATACTGCTGAATAG

Peptide Sequence

PEP ID

XP_016454522.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Nicotiana tabacum]
Sequence

MSSSKGSRKGSKPTHNSRRQFNNQNWVIKSPLNQNPIDPIEVSKQESISEFIPKDQKKPQ
NHKNSKRVSKNGRAHVVNGNFEKKEDEVDIVKQESAKEEEKSGESVEKVKVEGPVLYNND
VDCIWRRLEELQLGAEEPELSAEQLRINDQAQEDELLVLESIYGDNVFILDRQNGLRSFQ
IHIHIEVPDGLTVFVNLSSSGALGISEDSSPECSYSFKVEHLPPIVLTCLLPKSYPSHLA
PHFTISVQWLDSAKISSLCSMLDSIWKEQLGQEVIYQWVEWLHSSSLSHFQFDQEIKLGF
CAKSHIGDRRAISGTVSPEVDIPSLKNYDEEQRHENFRRNIHQCCICFSEFPGMEFVRLP
CQHFFCLSCMKTYSDIHVKEGTISKLLCPEAKCGGMIPPGLLKRLLGEVEFERWESLMLQ
KTLESMSDVCYCPRCETVCIEDEDVHAQCAKCFYSFCTLCKEKRHVGVTCMTPEIKLRIL
QERQNSSQLKDDQRHREKEIINEILSMKEIHRSAKQCPSCKMAISRTEGCNKMVCDNCGA
YFCYRCNQEIEGYEHFREGKCELFPPEAIQMWEERINHRQMVGQIQAQIHANHGHPCPNC
GQMNAKVGNNNHIFCWACQNHYCYLCRKNVKRSSQHYGPKGCKQHTAE

Transcript Sequence

Gene sequence data has not been registered.